I had this problem with Juno (3.8) - I don’t know how I installed eGit, but I think I did it wrong.
I tried to completely remove Eclipse from my Ubuntu 14.04 and reinstall it, but eGit was still there ...
Finally, delete the hidden .eclipse directory from my home folder to fix this problem. Then I installed eGit again, selecting "All Available Sites" and find it in the list.
Hope this helps anyone :)
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