Problems installing the GenomicFeatures package

Sorry to be back so soon with a simple installation question, but my failure to solve this problem alone seriously worsens my performance. Anyway, I tried installing GenomicFeatures as suggested by the BC website.

> source("http://bioconductor.org/biocLite.R")
> biocLite("GenomicFeatures")

I received the following error messages (besides a few warning messages)

ERROR: configuration failed for package ‘RCurl’
* removing ‘/home/tim/R/i686-pc-linux-gnu-library/2.15/RCurl’
ERROR: dependencies ‘XML’, ‘RCurl’ are not available for package ‘rtracklayer’
* removing ‘/home/tim/R/i686-pc-linux-gnu-library/2.15/rtracklayer’
ERROR: dependencies ‘XML’, ‘RCurl’ are not available for package ‘biomaRt’
* removing ‘/home/tim/R/i686-pc-linux-gnu-library/2.15/biomaRt’
ERROR: dependencies ‘rtracklayer’, ‘biomaRt’, ‘RCurl’ are not available for package ‘GenomicFeatures’
* removing ‘/home/tim/R/i686-pc-linux-gnu-library/2.15/GenomicFeatures’

So, there are some dependency problems that I assume, but it seems strange that they will be automatically installed before GF. I am using version 2.15.0. Are there any clues regarding the problem? I would be happy to provide additional information as needed. Thank.

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1 answer

, , , . .

, RCurl XML. , . , Linux. Debian (Debian, Ubuntu, Mint,...), RCURL libcurl4-openssl-dev, XML libxml2-dev. ,

sudo apt-get install libcurl4-openssl-dev libxml2-dev

. RCurl XML R.

install.packages("RCurl")
install.packages("XML")

GenomicFeatures Bioconductor.

source("http://bioconductor.org/biocLite.R")
biocLite("GenomicFeatures")

, Windows - RCURL XML , , - . , , RCurl XML, , Windows, , Linux.

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