Build Warnings - Highlight COM Link

I have a couple of active x controls mentioned in my .NET 3.5 application that we use with reg free COM. When I build the solution, it completes successfully, but with a bunch of warnings that says: "The problem of isolating the COM link" ActiveXControl ": registry key:" path "has not been imported", and therefore the manifest is not fully generated.

What is strange is that one of the active x controls is successfully created, and the other even if it looks like reference properties.

The only thing I can think about right now is what I'm building on a 64-bit machine. The registry path in warnings is the path in the 64-bit part of the registry, but the active x controls are registered in Wow6432Node.

All projects have an x86 target platform and a .NET 3.5 framework. Is there a way to tell MSBuild to look in the 32-bit registry or is there something else that I am missing?

Thanks in advance.