Let me start with the fact that I know that there are several topics that discuss issues like mine, but the proposed solutions for some reason do not work for me for some reason. Also, I am new to downloading files from the Internet using scripts. So far I have mainly used python as a replacement for Matlab (using numpy / scipy). Therefore, if I make stupid mistakes, please be with me.
My goal: I want to download many .csv files from an internet database (http://dna.korea.ac.kr/vhot/) automatically using python. I want to do this because it is too cumbersome to download the 1000+ CSV files that I need manually. Access to the database can only be obtained using the user interface, where you need to select several options from the drop-down menu, so that finally, with links to CSV files, after some steps. I found out that the URL that you get after filling out the drop-down menus and clicking "search" contains all the options for the drop-down menu. This means that I can just change them and not use the drop-down menu, which helps a lot.
An example url from this site (let's call it url1 ):
url1 = http://dna.korea.ac.kr/vhot/search.php?species=Human&selector=drop&mirname=&mirname_drop=hbv-miR-B2RC&pita=on&set=and&miranda_th=-- 5 & ββrh_th = -10 & ts_th = 0 & mt_th = 7.3 & pt_th = 99999 & gene =
On this page I can select 5 csv files, one example directs me to the following URL:
URL2 = http://dna.korea.ac.kr/vhot/download.php?mirname=hbv-miR-B2RC&species_filter=species_id+%3D+9606&set=and&gene_filter=&method=pita&m_th=-5&rh_th=-10&ts_th=0&mt_th=7.3&pt_th = 99999 & targetscan = & miranda = & rnahybrid = & microt = & pita = on
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stackoverflow.com/questions/7603044/how-to-download-a-file-returned-indirectly-from-html-form-submission-pyt
stackoverflow.com/questions/9419162/python-download-returned-zip-file-from-url
techniqal.com/blog/2008/07/31/python-file-read-write-with-urllib2/
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import urllib2
import csv
import sys
url = 'http://dna.korea.ac.kr/vhot/download.php?mirname=hbv-miR-B2RC&species_filter=species_id+%3D+9606&set=or&gene_filter=&method=targetscan&m_th=-5&rh_th=-10&ts_th=0&mt_th=7.3&pt_th=-10&targetscan=on&miranda=&rnahybrid=µt=&pita='
u = urllib2.urlopen(url)
localFile = open('file.csv', 'w')
localFile.write(u.read())
localFile.close()
req = urllib2.Request(url)
res = urllib2.urlopen(req)
finalurl = res.geturl()
pass
import requests
r = requests.get(url)
r.content
pass
import requests
r = requests.get(url,
allow_redirects=True,
data={'download_open': 'Download', 'format_open': '.csv'})
print r.content
import urllib
test1 = urllib.urlretrieve(url, "test.csv")
test2 = urllib.urlopen(url)
pass
# 2, # 3 # 4 .
# 1 # 5 CSV </script>'
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