Try to check if your data is stored on the SD card and copy the folder contained on your computer. But I think that if your data is stored on your SD card, the new apk will try to read it before you recreate everything and delete everything. If your data is stored elsewhere, simply back up that data.
I do not think that updating apk will destroy your data. The only thing you need to know when it is dangerous: back up to your computer. Hope this helps.
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