In my git repository, I can make git status, and it tells me that everything is up to date:
[598] : git status
nothing to commit (working directory clean)
If I connect to the repository using EGit and synchronize in Eclipse, I get:

Somehow EGit believes that many files were deleted and recorded with the same name. Since git status does not return anything to commit, I expect to get an empty window here.
For completeness: this is on OSX 10.7, but I also saw the same problem in Window 7 Pro.
Any ideas what is going on here?
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