Cytoplan initialization

is new to cytoscapeweb 2, I follow one of the above example to find out how to use the API. I cannot get it to work, and firebug reports the following message:

Returned component failure code: 0x80004005 (NS_ERROR_FAILURE) var n = this.nodesGroup.getBBox ();

in my html document, the cytoscapeweb div is embedded in the jquery tab widget (for context only)

somewhere in my.html

<div id="tabs">
    <ul>
      <li><a href="#tabs-1">Interactors Selection</a></li>
      <li><a href="#tabs-2">Interactome Builder</a></li>      
    </ul>
    <div id="tabs-1">
      <p>Tab 1 content</p>
    </div>
    <div id="tabs-2">
      <p>Tab 2 content</p>
       <div id="cy"></div>
    </div>
 </div>

and in foo.js

function cytoscapeInit() {
    alert ("intializing cytoscape");

    // create a mapper for node size
    var nodeSizeMapper = {
        continuousMapper: {
            attr: {
                name: "weight",
                min: 0,
                max: 100
            },
            mapped: {
                min: 15,
                max: 30
            }
        }
    };
 // call cytoscape web on the `cy` div
    $("#cy").cytoscapeweb({
                              // define the elements in the graph
    elements: {
        nodes: [
            { data: { id: "a", weight: 43 }, classes: "foo" },
            { data: { id: "b", weight: 2 }, classes: "bar" },
            { data: { id: "c", weight: 88 }, classes: "foo bar" }
        ],

        edges: [
            { data: { id: "ab", source: "a", target: "b", weight: 32 }, classes: "foo" },
            { data: { id: "bc", source: "b", target: "c", weight: 12 }, classes: "bar baz" },
            { data: { id: "ca", source: "c", target: "a", weight: 96 }, classes: "baz foo" },
            { data: { id: "ac", source: "a", target: "c", weight: 65 }, classes: "bar" }
        ]
    },

    // define the layout to use
    layout: {
        name: "preset",
        positions: {
            "a": { x: 30, y: 30 },
            "b": { x: 125, y: 131 },
            "c": { x: 200, y: 50 } 
        },
        fit: false,
        stop: function(){
            cy.reset();
            cy.center();
        }
    },

    // define the visual style (like css) of the graph
    style: {
        selectors: {
            "node":{
                shape: "ellipse",
                fillColor: "#888",
                height: nodeSizeMapper,
                width: nodeSizeMapper,
                labelText: {
                    passthroughMapper: "id"
                }
            },
            ".yay": {
                fillColor: "red",
                lineColor: "red",
                targetArrowColor: "red"
            },
            "edge": {
                lineColor: "#ccc",
                targetArrowColor: "#ccc",
                width: {
                    continuousMapper: {
                        attr: {
                            name: "weight"
                        },
                        mapped: {
                            min: 2,
                            max: 5
                        }
                    }
                },
                targetArrowShape: "triangle"
            },
            "node:selected": {
                fillColor: "#333"
            },
            "edge:selected":{
                lineColor: "#666",
                targetArrowColor: "#666"
            }
        }
    },

    // define the callback for when cytoscape web is ready
    ready: function( cy ){
        window.cy = cy;
    }
});

Am I missing something obvious?

If so, all apologies.

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2 answers

(1) Do not put warnings in your code, even if you are testing. It can break asynchronous code, for example, initialize Cytoscape Web or make an AJAX call. Use instead console.log().

(2) , , Cytoscape Web div, cy, . display: none;, Cytoscape Web 0x0 px. - position: absolute; left: -9999px; . , jQuery (, .ui-state-hidden - ).

(3) , Cytoscape Web divs.

+3

: jquery . http://cytoscape.imtqy.com/cytoscape.js/#core/events/cy.ready

    for(var t = 0, tot=pageList.length; t<tot; t++) //draw graph for all pages
    {           
        var currPage = pageList[t];
        getData(currPage);
    } 

    function getData(currPage)
    {
       //initiate graph, do stuff...

       //graph ready
       window[currPage + "Container"].ready(function(e)
       {    
           if (currPage.indexOf(lastPage) != -1)//executetabsafterlastgraphisdrawn  
           {
               setTabs();           
           }
       });
    }
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